NMDS plot — nmds_plot • ecositer

nmds_plot produces and interactive NMDS from the object created with ecositer::nmds_ecosite. The function allows the user to define several properties, such as where to use pres/abs data, the number of dimensions, and whether to remove rare species.

Usage

nmds_plot(static_location, nmds, veg_summary)

Arguments

static_location: path to static nasis SQlite.
nmds: object created from ecositer::nmds_ecosite
veg_summary: objected created from ecositer::veg_summary

Value

interactive NMDS plot

Examples

if (FALSE) #' example_data <- access_example_data()
my_nmds_plot <- nmds_plot(static_location = example_data,
nmds = my_nmds, veg_summary = my_veg_summary)
# user-defined static location
my_nmds_plot <- nmds_plot(static_location = "C:/Users/Nathan.Roe/Documents/SEKI/CA792_veg_data.sqlite",
nmds = my_nmds, veg_summary = my_veg_summary) # \dontrun{}
#> Error: Local NASIS ODBC connection has not been set up. Please see `http://ncss-tech.github.io/AQP/soilDB/setup_local_nasis.html`.
#